Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GK1419 | GK1420 | GK1419 | GK1420 | Hypothetical conserved protein. | Beta-alanine synthase. | 0.753 |
GK1419 | GK1421 | GK1419 | GK1421 | Hypothetical conserved protein. | Glutamate synthasesmall subunit. | 0.579 |
GK1419 | GK1422 | GK1419 | GK1422 | Hypothetical conserved protein. | Dihydropyrimidine dehydrogenase. | 0.791 |
GK1419 | GK1423 | GK1419 | GK1423 | Hypothetical conserved protein. | Dihydropyrimidinase (D-hydantoinase). | 0.880 |
GK1420 | GK1419 | GK1420 | GK1419 | Beta-alanine synthase. | Hypothetical conserved protein. | 0.753 |
GK1420 | GK1421 | GK1420 | GK1421 | Beta-alanine synthase. | Glutamate synthasesmall subunit. | 0.958 |
GK1420 | GK1422 | GK1420 | GK1422 | Beta-alanine synthase. | Dihydropyrimidine dehydrogenase. | 0.971 |
GK1420 | GK1423 | GK1420 | GK1423 | Beta-alanine synthase. | Dihydropyrimidinase (D-hydantoinase). | 0.996 |
GK1421 | GK1419 | GK1421 | GK1419 | Glutamate synthasesmall subunit. | Hypothetical conserved protein. | 0.579 |
GK1421 | GK1420 | GK1421 | GK1420 | Glutamate synthasesmall subunit. | Beta-alanine synthase. | 0.958 |
GK1421 | GK1422 | GK1421 | GK1422 | Glutamate synthasesmall subunit. | Dihydropyrimidine dehydrogenase. | 0.999 |
GK1421 | GK1423 | GK1421 | GK1423 | Glutamate synthasesmall subunit. | Dihydropyrimidinase (D-hydantoinase). | 0.988 |
GK1421 | pyrD | GK1421 | GK1154 | Glutamate synthasesmall subunit. | Dihydroorotate dehydrogenase, catalytic subunit (dihydroorotate oxidase); Catalyzes the conversion of dihydroorotate to orotate with NAD(+) as electron acceptor; Belongs to the dihydroorotate dehydrogenase family. Type 1 subfamily. | 0.959 |
GK1421 | pyrK | GK1421 | GK1153 | Glutamate synthasesmall subunit. | Dihydroorotate dehydrogenase electron transfer subunit; Responsible for channeling the electrons from the oxidation of dihydroorotate from the FMN redox center in the PyrD type B subunit to the ultimate electron acceptor NAD(+). | 0.989 |
GK1421 | pyrR | GK1421 | GK1147 | Glutamate synthasesmall subunit. | Pyrimidine operon regulatory protein; Regulates transcriptional attenuation of the pyrimidine nucleotide (pyr) operon by binding in a uridine-dependent manner to specific sites on pyr mRNA. This disrupts an antiterminator hairpin in the RNA and favors formation of a downstream transcription terminator, leading to a reduced expression of downstream genes. Belongs to the purine/pyrimidine phosphoribosyltransferase family. PyrR subfamily. | 0.900 |
GK1422 | GK1419 | GK1422 | GK1419 | Dihydropyrimidine dehydrogenase. | Hypothetical conserved protein. | 0.791 |
GK1422 | GK1420 | GK1422 | GK1420 | Dihydropyrimidine dehydrogenase. | Beta-alanine synthase. | 0.971 |
GK1422 | GK1421 | GK1422 | GK1421 | Dihydropyrimidine dehydrogenase. | Glutamate synthasesmall subunit. | 0.999 |
GK1422 | GK1423 | GK1422 | GK1423 | Dihydropyrimidine dehydrogenase. | Dihydropyrimidinase (D-hydantoinase). | 0.998 |
GK1422 | pyrB | GK1422 | GK1149 | Dihydropyrimidine dehydrogenase. | Aspartate carbamoyltransferase; Belongs to the aspartate/ornithine carbamoyltransferase superfamily. ATCase family. | 0.832 |
page 1 of 4