STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dsdAD-serine dehydratase (D-serine deaminase); Belongs to the serine/threonine dehydratase family. DsdA subfamily. (441 aa)    
Predicted Functional Partners:
GK1184
L-serine dehydratase (L-serine deaminase) beta chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.912
GK1185
L-serine dehydratase (L-serine deaminase) alpha chain; Belongs to the iron-sulfur dependent L-serine dehydratase family.
     
 0.912
GK1591
Threonine dehydratase (threonine ammonia-lyase).
     
 0.910
ilvA
Threonine dehydratase (threonine ammonia-lyase); Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA.
     
 0.910
GK1362
Hypothetical conserved protein.
  
  
  0.826
GK0562
Plant-metabolite dehydrogenase.
    
  0.801
GK1921
Maltose transacetylase (maltose O-acetyltransferase).
     
 0.625
Your Current Organism:
Geobacillus kaustophilus
NCBI taxonomy Id: 235909
Other names: G. kaustophilus HTA426, Geobacillus kaustophilus HTA426
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