Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GK0367 | GK2310 | GK0367 | GK2310 | Hypothetical conserved protein. | Anti-sigma F factor antagonist (stage II sporulation protein AA); Belongs to the anti-sigma-factor antagonist family. | 0.584 |
GK0367 | sigF | GK0367 | GK2308 | Hypothetical conserved protein. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.547 |
GK0367 | spoIIAB | GK0367 | GK2309 | Hypothetical conserved protein. | Anti-sigma F factor (serine kinase) (stage II sporulation protein AB); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.865 |
GK0367 | spoIIGA | GK0367 | GK1126 | Hypothetical conserved protein. | Protease (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.684 |
GK2303 | GK2304 | GK2303 | GK2304 | Sporulation protein. | Stage V sporulation protein AD. | 0.945 |
GK2303 | GK2305 | GK2303 | GK2305 | Sporulation protein. | Stage V sporulation protein AC. | 0.935 |
GK2303 | GK2310 | GK2303 | GK2310 | Sporulation protein. | Anti-sigma F factor antagonist (stage II sporulation protein AA); Belongs to the anti-sigma-factor antagonist family. | 0.665 |
GK2303 | sigF | GK2303 | GK2308 | Sporulation protein. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.818 |
GK2303 | sigG | GK2303 | GK1128 | Sporulation protein. | DNA-directed RNA polymerase sporulation-specific sigma factor (sigma-G); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.771 |
GK2303 | spoIIAB | GK2303 | GK2309 | Sporulation protein. | Anti-sigma F factor (serine kinase) (stage II sporulation protein AB); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.840 |
GK2303 | spoIIGA | GK2303 | GK1126 | Sporulation protein. | Protease (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.623 |
GK2303 | spoIIR | GK2303 | GK3376 | Sporulation protein. | Stage II sporulation protein R (pro-sigma-E processing factor). | 0.753 |
GK2303 | spoIVA | GK2303 | GK2217 | Sporulation protein. | Stage IV sporulation protein A (spore cortex formation and coat assembly); ATPase. Has a role at an early stage in the morphogenesis of the spore coat. | 0.774 |
GK2304 | GK2303 | GK2304 | GK2303 | Stage V sporulation protein AD. | Sporulation protein. | 0.945 |
GK2304 | GK2305 | GK2304 | GK2305 | Stage V sporulation protein AD. | Stage V sporulation protein AC. | 0.967 |
GK2304 | GK2310 | GK2304 | GK2310 | Stage V sporulation protein AD. | Anti-sigma F factor antagonist (stage II sporulation protein AA); Belongs to the anti-sigma-factor antagonist family. | 0.757 |
GK2304 | sigF | GK2304 | GK2308 | Stage V sporulation protein AD. | RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.841 |
GK2304 | sigG | GK2304 | GK1128 | Stage V sporulation protein AD. | DNA-directed RNA polymerase sporulation-specific sigma factor (sigma-G); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.780 |
GK2304 | spoIIAB | GK2304 | GK2309 | Stage V sporulation protein AD. | Anti-sigma F factor (serine kinase) (stage II sporulation protein AB); Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition. | 0.855 |
GK2304 | spoIIGA | GK2304 | GK1126 | Stage V sporulation protein AD. | Protease (sporulation sigma-E factor processing peptidase); Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. | 0.729 |
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