STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFB06829.1Farnesyl-diphosphate farnesyltransferase. (272 aa)    
Predicted Functional Partners:
SFA71919.1
Farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.857
SFA73754.1
Heptaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.857
SFA75956.1
FAD dependent oxidoreductase.
  
 
 0.791
SFA83290.1
hydroxymethylglutaryl-CoA synthase.
   
 
 0.791
SFA96714.1
Putative efflux protein, MATE family.
  
 
 0.791
SFB06807.1
Hypothetical protein.
       0.773
SFA89571.1
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.766
SFB24635.1
Glyceraldehyde-3-phosphate dehydrogenase (NAD+); Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.766
SFA80628.1
Multidrug resistance protein, MATE family.
   
 
 0.761
SFA73519.1
SSU ribosomal protein S1P.
   
    0.756
Your Current Organism:
Lentibacillus halodurans
NCBI taxonomy Id: 237679
Other names: Bacillaceae bacterium 8-1, CGMCC 1.3702, DSM 18342, L. halodurans, Lentibacillus halodurans Yuan et al. 2007, strain 8-1
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