STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gnlGluconolactonase; Identified by similarity to SP:Q01578; match to protein family HMM PF08450. (344 aa)    
Predicted Functional Partners:
ACP_0310
Shikimate kinase domain protein; Identified by match to protein family HMM PF01202; match to protein family HMM TIGR01313.
    
 0.907
gdh
Glucose 1-dehydrogenase; Identified by similarity to SP:P12310; match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659.
   
 
  0.900
ACP_0198
Conserved hypothetical protein; Identified by similarity to GB:BAD63650.1.
 
   
 0.805
ACP_0194
Oxidoreductase, Gfo/Idh/MocA family; Identified by match to protein family HMM PF01408; match to protein family HMM PF02894.
 
    0.732
acdA
acyl-CoA dehydrogenase; Identified by similarity to SP:P45867; match to protein family HMM PF00441; match to protein family HMM PF02770; match to protein family HMM PF02771; match to protein family HMM PF08028.
      
 0.530
ACP_1766
Prephenate dehydrogenase; Identified by match to protein family HMM PF01210; match to protein family HMM PF02153.
      
 0.520
ACP_0351
Conserved hypothetical protein.
  
     0.506
ACP_0193
Cupin domain protein; Identified by match to protein family HMM PF07883.
 
     0.504
ACP_0196
MFS transporter, anion:cation symporter (ACS) family; Identified by match to protein family HMM PF07690.
 
     0.503
ACP_0197
Identified by match to protein family HMM PF00920; Belongs to the IlvD/Edd family.
 
     0.502
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.