node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
ACP_0532 | ACP_0533 | ACP_0532 | ACP_0533 | Identified by match to protein family HMM PF00034. | Tat pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409. | 0.871 |
ACP_0532 | ruvC | ACP_0532 | ACP_0531 | Identified by match to protein family HMM PF00034. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.620 |
ACP_0533 | ACP_0532 | ACP_0533 | ACP_0532 | Tat pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409. | Identified by match to protein family HMM PF00034. | 0.871 |
ACP_0533 | ruvC | ACP_0533 | ACP_0531 | Tat pathway signal sequence domain protein; Identified by match to protein family HMM TIGR01409. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.620 |
dndB | ruvC | ACP_3186 | ACP_0531 | DNA sulfur modification protein DndB; Identified by similarity to GB:BAC70643.1; match to protein family HMM TIGR03187; match to protein family HMM TIGR03233. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.622 |
recJ | recN | ACP_1001 | ACP_0506 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | 0.730 |
recJ | recO | ACP_1001 | ACP_0593 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.762 |
recJ | recQ | ACP_1001 | ACP_0647 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614. | 0.822 |
recJ | recR | ACP_1001 | ACP_0511 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.820 |
recJ | ruvA | ACP_1001 | ACP_2054 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.742 |
recJ | ruvB | ACP_1001 | ACP_2080 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.748 |
recJ | ruvC | ACP_1001 | ACP_0531 | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.817 |
recN | recJ | ACP_0506 | ACP_1001 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | 0.730 |
recN | recO | ACP_0506 | ACP_0593 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.641 |
recN | recQ | ACP_0506 | ACP_0647 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | ATP-dependent DNA helicase RecQ; Identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614. | 0.608 |
recN | recR | ACP_0506 | ACP_0511 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.686 |
recN | ruvA | ACP_0506 | ACP_2054 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB. | 0.769 |
recN | ruvB | ACP_0506 | ACP_2080 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. | 0.670 |
recN | ruvC | ACP_0506 | ACP_0531 | DNA repair protein RecN; May be involved in recombinational repair of damaged DNA. | Crossover junction endodeoxyribonuclease RuvC; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group. | 0.626 |
recO | recJ | ACP_0593 | ACP_1001 | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | single-stranded-DNA-specific exonuclease RecJ; Identified by match to protein family HMM PF01368; match to protein family HMM PF02272; match to protein family HMM TIGR00644. | 0.762 |