STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1052Putative pterin-4-alpha-carbinolamine dehydratase; Identified by match to protein family HMM PF01329. (92 aa)    
Predicted Functional Partners:
phhA
Phenylalanine-4-hydroxylase; Identified by similarity to SP:P30967; match to protein family HMM PF00351.
 
 0.989
ACP_1051
Response regulator; Identified by match to protein family HMM PF00072; match to protein family HMM PF01966; match to protein family HMM TIGR00277.
       0.671
hmgA
Homogentisate 1,2-dioxygenase; Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate.
  
  
 0.584
ACP_1022
methylmalonyl-CoA epimerase; Identified by similarity to SP:Q96PE7; match to protein family HMM PF00903; match to protein family HMM TIGR03081.
  
  
 0.465
hppD
4-hydroxyphenylpyruvate dioxygenase; Identified by match to protein family HMM PF00903; match to protein family HMM TIGR01263.
  
  
 0.465
ACP_1050
Sigma-70 domain protein; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937.
       0.434
ACP_0017
Conserved hypothetical protein; Identified by match to protein family HMM PF07287.
  
  
 0.419
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.