STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_1967Putative rhamnosyl transferase; Identified by similarity to GB:AAA62129.1; match to protein family HMM PF03033. (424 aa)    
Predicted Functional Partners:
ACP_2988
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
 
 0.839
ACP_0169
Identified by match to protein family HMM PF00067; Belongs to the cytochrome P450 family.
 
 
 0.837
ACP_1968
Identified by similarity to SP:P22333; match to protein family HMM PF00962.
       0.773
ACP_1162
Nonribosomal peptide synthetase; Identified by match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00975; match to protein family HMM TIGR01733.
 
  
 0.705
ACP_1157
Polyketide synthase peptide synthetase fusion protein; Identified by match to protein family HMM PF00109; match to protein family HMM PF00202; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733.
 
  
 0.611
ACP_0038
Identified by similarity to GB:AAB70917.1; match to protein family HMM PF00041; match to protein family HMM PF00704; match to protein family HMM PF02839.
  
  
 0.534
ACP_1148
Thioesterase domain protein; Identified by match to protein family HMM PF00975.
 
   
 0.432
ACP_0030
Chitinase; Identified by similarity to GB:AAK69033.1; match to protein family HMM PF00704.
   
  
 0.416
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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