STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_2200Transporter, glucose-selective OprB porin (OprB) family; Identified by similarity to SP:Q51485; match to protein family HMM PF04966; Belongs to the OprB family. (396 aa)    
Predicted Functional Partners:
ACP_2198
Histidine kinase; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
     
 0.759
ACP_2197
Two-component system, regulatory protein; Identified by match to protein family HMM PF00072; match to protein family HMM PF02954.
       0.757
ACP_2201
Putative membrane protein; Identified by match to protein family HMM PF03601.
       0.462
ACP_2291
Efflux transporter, RND family, MFP subunit; Identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
     0.447
ACP_3030
Radical SAM domain protein; Identified by match to protein family HMM PF04055; match to protein family HMM TIGR03471.
  
     0.427
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.