STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ACP_3169Putative conjugal transfer protein, TrbI family; Identified by match to protein family HMM PF03743. (418 aa)    
Predicted Functional Partners:
ACP_1184
Type IV secretion/conjugal transfer ATPase, VirB4 family.
 
 
 0.987
ACP_3260
Putative conjugal transfer protein; Identified by match to protein family HMM PF03524.
  
 0.981
ACP_1189
Putative conjugal transfer protein.
 
  
 0.976
ACP_3168
Hypothetical protein; Identified by glimmer; putative.
  
 
 0.958
ACP_3167
Type IV secretion/conjugal transfer ATPase, VirB4 family.
 
  
 0.928
ACP_1186
Putative conjugal transfer protein, TrbI family; Identified by match to protein family HMM PF03743.
  
  
 
0.923
ACP_1182
Conserved hypothetical protein; Identified by similarity to GB:CAI30159.1.
    
 0.917
ACP_1183
Hypothetical protein; Identified by glimmer; putative.
    
 0.909
ACP_3259
Putative conjugal transfer protein, TrbI family; Identified by match to protein family HMM PF03743.
  
  
 
0.901
ACP_3261
Type IV secretion/conjugal transfer ATPase, VirB4 family.
 
  
 0.880
Your Current Organism:
Acidobacterium capsulatum
NCBI taxonomy Id: 240015
Other names: A. capsulatum ATCC 51196, Acidobacterium capsulatum ATCC 51196, Acidobacterium capsulatum str. ATCC 51196, Acidobacterium capsulatum strain ATCC 51196
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.