Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_0568 | petH | Ava_0568 | Ava_0782 | Ferredoxin (2Fe-2S). | Oxidoreductase FAD/NAD(P)-binding protein. | 0.592 |
Ava_0568 | psaL | Ava_0568 | Ava_1476 | Ferredoxin (2Fe-2S). | Photosystem I reaction centre, subunit XI PsaL. | 0.576 |
Ava_0981 | petH | Ava_0981 | Ava_0782 | Ferredoxin (2Fe-2S). | Oxidoreductase FAD/NAD(P)-binding protein. | 0.661 |
Ava_0981 | psaL | Ava_0981 | Ava_1476 | Ferredoxin (2Fe-2S). | Photosystem I reaction centre, subunit XI PsaL. | 0.644 |
Ava_1533 | petH | Ava_1533 | Ava_0782 | Ferredoxin (2Fe-2S). | Oxidoreductase FAD/NAD(P)-binding protein. | 0.822 |
Ava_1533 | psaL | Ava_1533 | Ava_1476 | Ferredoxin (2Fe-2S). | Photosystem I reaction centre, subunit XI PsaL. | 0.576 |
Ava_1843 | Ava_4487 | Ava_1843 | Ava_4487 | Photosystem II manganese-stabilizing protein PsbO. | Ferredoxin. | 0.434 |
Ava_1843 | petH | Ava_1843 | Ava_0782 | Photosystem II manganese-stabilizing protein PsbO. | Oxidoreductase FAD/NAD(P)-binding protein. | 0.586 |
Ava_1843 | psaL | Ava_1843 | Ava_1476 | Photosystem II manganese-stabilizing protein PsbO. | Photosystem I reaction centre, subunit XI PsaL. | 0.871 |
Ava_4487 | Ava_1843 | Ava_4487 | Ava_1843 | Ferredoxin. | Photosystem II manganese-stabilizing protein PsbO. | 0.434 |
Ava_4487 | petH | Ava_4487 | Ava_0782 | Ferredoxin. | Oxidoreductase FAD/NAD(P)-binding protein. | 0.604 |
Ava_4487 | psaL | Ava_4487 | Ava_1476 | Ferredoxin. | Photosystem I reaction centre, subunit XI PsaL. | 0.751 |
fdxH1 | petH | Ava_3940 | Ava_0782 | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Donates electrons to the nitrogenase 1. | Oxidoreductase FAD/NAD(P)-binding protein. | 0.606 |
fdxH1 | psaL | Ava_3940 | Ava_1476 | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Donates electrons to the nitrogenase 1. | Photosystem I reaction centre, subunit XI PsaL. | 0.632 |
fdxH2 | petH | Ava_4258 | Ava_0782 | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Donates electrons to the nitrogenase 2. | Oxidoreductase FAD/NAD(P)-binding protein. | 0.595 |
fdxH2 | psaL | Ava_4258 | Ava_1476 | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. Donates electrons to the nitrogenase 2. | Photosystem I reaction centre, subunit XI PsaL. | 0.624 |
gap2 | petH | Ava_2318 | Ava_0782 | Glyceraldehyde 3-phosphate dehydrogenase (NADP+); Gap2 has a major role in carbon fixation as a component of the Calvin cycle. Catalyzes the oxidative phosphorylation of glyceraldehyde 3-phosphate (G3P) to 1,3-bisphosphoglycerate (BPG) using the cofactor NAD. The first reaction step involves the formation of a hemiacetal intermediate between G3P and a cysteine residue, and this hemiacetal intermediate is then oxidized to a thioester, with concomitant reduction of NAD to NADH. The reduced NADH is then exchanged with the second NAD, and the thioester is attacked by a nucleophilic inorgan [...] | Oxidoreductase FAD/NAD(P)-binding protein. | 0.571 |
petF1 | petH | Ava_0756 | Ava_0782 | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Oxidoreductase FAD/NAD(P)-binding protein. | 0.825 |
petF1 | psaL | Ava_0756 | Ava_1476 | Ferredoxin (2Fe-2S); Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions. | Photosystem I reaction centre, subunit XI PsaL. | 0.635 |
petH | Ava_0568 | Ava_0782 | Ava_0568 | Oxidoreductase FAD/NAD(P)-binding protein. | Ferredoxin (2Fe-2S). | 0.592 |
page 1 of 2