Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_0517 | Ava_1529 | Ava_0517 | Ava_1529 | Protein of unknown function YGGT. | Cytochrome c, class I. | 0.743 |
Ava_0517 | Ava_2744 | Ava_0517 | Ava_2744 | Protein of unknown function YGGT. | Cytochrome c, class I. | 0.747 |
Ava_0517 | Ava_3834 | Ava_0517 | Ava_3834 | Protein of unknown function YGGT. | Conserved hypothetical protein. | 0.584 |
Ava_0517 | petC | Ava_0517 | Ava_0385 | Protein of unknown function YGGT. | Rieske (2Fe-2S) region; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. Belongs to the Rieske iron-sulfur protein family. | 0.408 |
Ava_0517 | petJ | Ava_0517 | Ava_1200 | Protein of unknown function YGGT. | Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.722 |
Ava_0517 | psaE | Ava_0517 | Ava_1270 | Protein of unknown function YGGT. | Photosystem I reaction centre subunit IV/PsaE; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family. | 0.768 |
Ava_0517 | psb28 | Ava_0517 | Ava_0593 | Protein of unknown function YGGT. | Photosystem II protein PsbW, class I; Belongs to the Psb28 family. | 0.768 |
Ava_0517 | psbU | Ava_0517 | Ava_0635 | Protein of unknown function YGGT. | Photosystem II oxygen evolving complex protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation. | 0.553 |
Ava_0517 | psbV | Ava_0517 | Ava_2746 | Protein of unknown function YGGT. | Cytochrome c, class I; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II. | 0.538 |
Ava_1529 | Ava_0517 | Ava_1529 | Ava_0517 | Cytochrome c, class I. | Protein of unknown function YGGT. | 0.743 |
Ava_1529 | Ava_2744 | Ava_1529 | Ava_2744 | Cytochrome c, class I. | Cytochrome c, class I. | 0.909 |
Ava_1529 | Ava_3834 | Ava_1529 | Ava_3834 | Cytochrome c, class I. | Conserved hypothetical protein. | 0.627 |
Ava_1529 | petC | Ava_1529 | Ava_0385 | Cytochrome c, class I. | Rieske (2Fe-2S) region; Component of the cytochrome b6-f complex, which mediates electron transfer between photosystem II (PSII) and photosystem I (PSI), cyclic electron flow around PSI, and state transitions. Belongs to the Rieske iron-sulfur protein family. | 0.749 |
Ava_1529 | petE | Ava_1529 | Ava_2745 | Cytochrome c, class I. | Blue (type 1) copper domain protein; Participates in electron transfer between P700 and the cytochrome b6-f complex in photosystem I. | 0.728 |
Ava_1529 | petJ | Ava_1529 | Ava_1200 | Cytochrome c, class I. | Cytochrome c, class I; Functions as an electron carrier between membrane-bound cytochrome b6-f and photosystem I in oxygenic photosynthesis. | 0.905 |
Ava_1529 | psaE | Ava_1529 | Ava_1270 | Cytochrome c, class I. | Photosystem I reaction centre subunit IV/PsaE; Stabilizes the interaction between PsaC and the PSI core, assists the docking of the ferredoxin to PSI and interacts with ferredoxin-NADP oxidoreductase; Belongs to the PsaE family. | 0.747 |
Ava_1529 | psb28 | Ava_1529 | Ava_0593 | Cytochrome c, class I. | Photosystem II protein PsbW, class I; Belongs to the Psb28 family. | 0.721 |
Ava_1529 | psbU | Ava_1529 | Ava_0635 | Cytochrome c, class I. | Photosystem II oxygen evolving complex protein PsbU; Stabilizes the structure of photosystem II oxygen-evolving complex (OEC), the ion environment of oxygen evolution and protects the OEC against heat-induced inactivation. | 0.735 |
Ava_1529 | psbV | Ava_1529 | Ava_2746 | Cytochrome c, class I. | Cytochrome c, class I; Low-potential cytochrome c that plays a role in the oxygen- evolving complex of photosystem II. | 0.782 |
Ava_2744 | Ava_0517 | Ava_2744 | Ava_0517 | Cytochrome c, class I. | Protein of unknown function YGGT. | 0.747 |
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