Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_1416 | Ava_2173 | Ava_1416 | Ava_2173 | Lumazine-binding protein. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.620 |
Ava_1416 | rpmE | Ava_1416 | Ava_0720 | Lumazine-binding protein. | LSU ribosomal protein L31P; Binds the 23S rRNA; Belongs to the bacterial ribosomal protein bL31 family. Type A subfamily. | 0.768 |
Ava_1986 | Ava_2170 | Ava_1986 | Ava_2170 | PfkB. | Transcriptional regulator, LacI family. | 0.732 |
Ava_1986 | Ava_2171 | Ava_1986 | Ava_2171 | PfkB. | Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-. | 0.817 |
Ava_1986 | Ava_2173 | Ava_1986 | Ava_2173 | PfkB. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.701 |
Ava_1986 | Ava_2174 | Ava_1986 | Ava_2174 | PfkB. | S-layer region-like protein; Belongs to the OprB family. | 0.695 |
Ava_1986 | aroB | Ava_1986 | Ava_4386 | PfkB. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.442 |
Ava_1986 | rbsA | Ava_1986 | Ava_2172 | PfkB. | Monosaccharide ABC transporter ATP-binding protein, CUT2 family; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. | 0.788 |
Ava_2170 | Ava_1986 | Ava_2170 | Ava_1986 | Transcriptional regulator, LacI family. | PfkB. | 0.732 |
Ava_2170 | Ava_2171 | Ava_2170 | Ava_2171 | Transcriptional regulator, LacI family. | Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-. | 0.809 |
Ava_2170 | Ava_2173 | Ava_2170 | Ava_2173 | Transcriptional regulator, LacI family. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.890 |
Ava_2170 | Ava_2174 | Ava_2170 | Ava_2174 | Transcriptional regulator, LacI family. | S-layer region-like protein; Belongs to the OprB family. | 0.694 |
Ava_2170 | Ava_2919 | Ava_2170 | Ava_2919 | Transcriptional regulator, LacI family. | PfkB. | 0.808 |
Ava_2170 | aroB | Ava_2170 | Ava_4386 | Transcriptional regulator, LacI family. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ); Belongs to the sugar phosphate cyclases superfamily. Dehydroquinate synthase family. | 0.651 |
Ava_2170 | rbsA | Ava_2170 | Ava_2172 | Transcriptional regulator, LacI family. | Monosaccharide ABC transporter ATP-binding protein, CUT2 family; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family. | 0.921 |
Ava_2171 | Ava_1986 | Ava_2171 | Ava_1986 | Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-. | PfkB. | 0.817 |
Ava_2171 | Ava_2170 | Ava_2171 | Ava_2170 | Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-. | Transcriptional regulator, LacI family. | 0.809 |
Ava_2171 | Ava_2173 | Ava_2171 | Ava_2173 | Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-. | Inner-membrane translocator; Belongs to the binding-protein-dependent transport system permease family. | 0.996 |
Ava_2171 | Ava_2174 | Ava_2171 | Ava_2174 | Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-. | S-layer region-like protein; Belongs to the OprB family. | 0.737 |
Ava_2171 | Ava_2919 | Ava_2171 | Ava_2919 | Monosaccharide ABC transporter substrate-binding protein, CUT2 family; TC 3.A.1.2.-. | PfkB. | 0.782 |
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