Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_2127 | Ava_3988 | Ava_2127 | Ava_3988 | Aminotransferase. | Histidine ammonia-lyase; Catalyzes the non-oxidative deamination of L-phenylalanine to form trans-cinnamic acid, the first step in the phenylpropanoid pathway. | 0.911 |
Ava_2127 | Ava_4397 | Ava_2127 | Ava_4397 | Aminotransferase. | Arogenate dehydrogenase (NADP). | 0.910 |
Ava_2127 | Ava_4666 | Ava_2127 | Ava_4666 | Aminotransferase. | 4-hydroxyphenylpyruvate dioxygenase. | 0.914 |
Ava_2127 | hisC2 | Ava_2127 | Ava_2242 | Aminotransferase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.918 |
Ava_2127 | pheA | Ava_2127 | Ava_1284 | Aminotransferase. | Prephenate dehydratase. | 0.974 |
Ava_3988 | Ava_2127 | Ava_3988 | Ava_2127 | Histidine ammonia-lyase; Catalyzes the non-oxidative deamination of L-phenylalanine to form trans-cinnamic acid, the first step in the phenylpropanoid pathway. | Aminotransferase. | 0.911 |
Ava_3988 | hisB | Ava_3988 | Ava_3285 | Histidine ammonia-lyase; Catalyzes the non-oxidative deamination of L-phenylalanine to form trans-cinnamic acid, the first step in the phenylpropanoid pathway. | Imidazoleglycerol-phosphate dehydratase. | 0.763 |
Ava_3988 | hisC2 | Ava_3988 | Ava_2242 | Histidine ammonia-lyase; Catalyzes the non-oxidative deamination of L-phenylalanine to form trans-cinnamic acid, the first step in the phenylpropanoid pathway. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.919 |
Ava_3988 | pheA | Ava_3988 | Ava_1284 | Histidine ammonia-lyase; Catalyzes the non-oxidative deamination of L-phenylalanine to form trans-cinnamic acid, the first step in the phenylpropanoid pathway. | Prephenate dehydratase. | 0.804 |
Ava_4397 | Ava_2127 | Ava_4397 | Ava_2127 | Arogenate dehydrogenase (NADP). | Aminotransferase. | 0.910 |
Ava_4397 | hisC2 | Ava_4397 | Ava_2242 | Arogenate dehydrogenase (NADP). | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.973 |
Ava_4397 | pheA | Ava_4397 | Ava_1284 | Arogenate dehydrogenase (NADP). | Prephenate dehydratase. | 0.963 |
Ava_4666 | Ava_2127 | Ava_4666 | Ava_2127 | 4-hydroxyphenylpyruvate dioxygenase. | Aminotransferase. | 0.914 |
Ava_4666 | hisC2 | Ava_4666 | Ava_2242 | 4-hydroxyphenylpyruvate dioxygenase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.916 |
hisB | Ava_3988 | Ava_3285 | Ava_3988 | Imidazoleglycerol-phosphate dehydratase. | Histidine ammonia-lyase; Catalyzes the non-oxidative deamination of L-phenylalanine to form trans-cinnamic acid, the first step in the phenylpropanoid pathway. | 0.763 |
hisB | hisC2 | Ava_3285 | Ava_2242 | Imidazoleglycerol-phosphate dehydratase. | Histidinol phosphate aminotransferase apoenzyme; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily. | 0.997 |
hisB | hisD1 | Ava_3285 | Ava_0855 | Imidazoleglycerol-phosphate dehydratase. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.979 |
hisB | hisD2 | Ava_3285 | Ava_4204 | Imidazoleglycerol-phosphate dehydratase. | Histidinol dehydrogenase; Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine. | 0.981 |
hisB | hisF | Ava_3285 | Ava_1007 | Imidazoleglycerol-phosphate dehydratase. | Imidazole glycerol phosphate synthase subunit hisF; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit. | 0.998 |
hisB | hisI | Ava_3285 | Ava_4918 | Imidazoleglycerol-phosphate dehydratase. | phosphoribosyl-ATP pyrophosphatase / phosphoribosyl-AMP cyclohydrolase; In the N-terminal section; belongs to the PRA-CH family. | 0.999 |
page 1 of 3