Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_0214 | Ava_2258 | Ava_0214 | Ava_2258 | 4-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.938 |
Ava_0214 | Ava_3534 | Ava_0214 | Ava_3534 | 4-aminobutyrate aminotransferase apoenzyme; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. | Aldehyde dehydrogenase. | 0.936 |
Ava_0523 | Ava_0936 | Ava_0523 | Ava_0936 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Succinate dehydrogenase subunit A. | 0.999 |
Ava_0523 | Ava_2258 | Ava_0523 | Ava_2258 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.920 |
Ava_0523 | Ava_2713 | Ava_0523 | Ava_2713 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Citrate synthase; Belongs to the citrate synthase family. | 0.888 |
Ava_0523 | Ava_3534 | Ava_0523 | Ava_3534 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Aldehyde dehydrogenase. | 0.934 |
Ava_0523 | Ava_3556 | Ava_0523 | Ava_3556 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Fumarase. | 0.930 |
Ava_0523 | Ava_3648 | Ava_0523 | Ava_3648 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Succinate dehydrogenase subunit C. | 0.984 |
Ava_0523 | Ava_4831 | Ava_0523 | Ava_4831 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Isocitrate dehydrogenase (NADP). | 0.845 |
Ava_0523 | acsA | Ava_0523 | Ava_1206 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.541 |
Ava_0523 | mdh | Ava_0523 | Ava_1273 | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.856 |
Ava_0936 | Ava_0523 | Ava_0936 | Ava_0523 | Succinate dehydrogenase subunit A. | Succinate dehydrogenase subunit B; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family. | 0.999 |
Ava_0936 | Ava_2258 | Ava_0936 | Ava_2258 | Succinate dehydrogenase subunit A. | Aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.930 |
Ava_0936 | Ava_2713 | Ava_0936 | Ava_2713 | Succinate dehydrogenase subunit A. | Citrate synthase; Belongs to the citrate synthase family. | 0.655 |
Ava_0936 | Ava_3534 | Ava_0936 | Ava_3534 | Succinate dehydrogenase subunit A. | Aldehyde dehydrogenase. | 0.938 |
Ava_0936 | Ava_3556 | Ava_0936 | Ava_3556 | Succinate dehydrogenase subunit A. | Fumarase. | 0.983 |
Ava_0936 | Ava_3648 | Ava_0936 | Ava_3648 | Succinate dehydrogenase subunit A. | Succinate dehydrogenase subunit C. | 0.963 |
Ava_0936 | Ava_4831 | Ava_0936 | Ava_4831 | Succinate dehydrogenase subunit A. | Isocitrate dehydrogenase (NADP). | 0.428 |
Ava_0936 | acsA | Ava_0936 | Ava_1206 | Succinate dehydrogenase subunit A. | Acetyl-coenzyme A synthetase; Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA; Belongs to the ATP-dependent AMP-binding enzyme family. | 0.469 |
Ava_0936 | mdh | Ava_0936 | Ava_1273 | Succinate dehydrogenase subunit A. | Malate dehydrogenase (NAD); Catalyzes the reversible oxidation of malate to oxaloacetate. Belongs to the LDH/MDH superfamily. MDH type 3 family. | 0.586 |
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