STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcyAFerredoxin-dependent bilin reductase; Catalyzes the four-electron reduction of biliverdin IX-alpha (2-electron reduction at both the A and D rings); the reaction proceeds via an isolatable 2-electron intermediate, 181,182-dihydrobiliverdin. Belongs to the HY2 family. (245 aa)    
Predicted Functional Partners:
Ava_3767
Heme oxygenase.
 
  
 0.946
Ava_3827
Heme oxygenase.
 
  
 0.939
Ava_0755
Homoserine dehydrogenase, NAD-binding protein.
     
 0.927
cpcS-2
Conserved hypothetical protein; Covalently attaches a chromophore to Cys residue(s) of phycobiliproteins.
  
   
 0.774
Ava_0805
Conserved hypothetical protein.
  
     0.771
Ava_0477
Conserved hypothetical protein.
  
     0.770
Ava_0241
Conserved hypothetical protein.
  
     0.769
Ava_0927
Conserved hypothetical protein.
  
     0.766
Ava_2003
Conserved hypothetical protein.
  
     0.765
Ava_2667
Conserved hypothetical protein.
  
     0.759
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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