STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_3654Nitrate transport permease. (273 aa)    
Predicted Functional Partners:
Ava_4542
Nitrate transport ATP-binding subunits C and D.
 
 0.994
Ava_3655
Nitrate transport ATP-binding subunits C and D.
 
 0.992
Ava_3656
Twin-arginine translocation pathway signal.
 
 
 0.990
Ava_4543
Nitrate transport ATP-binding subunits C and D.
 
 0.987
Ava_0876
Nitrate transport ATP-binding subunits C and D.
 
 0.985
Ava_4540
Twin-arginine translocation pathway signal.
 
 
 0.985
Ava_0875
Twin-arginine translocation pathway signal.
 
 
  0.979
Ava_4544
Assimilatory nitrate reductase (ferredoxin) precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.938
Ava_1025
Nitrate transport ATP-binding subunits C and D.
 
  
 0.932
Ava_0874
Nitrate transport permease.
  
  
 
0.908
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
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