Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Ava_0137 | Ava_3887 | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | ADP-ribosylation/Crystallin J1. | 0.478 |
Ava_2164 | Ava_3887 | Nitrogen regulatory protein P-II. | ADP-ribosylation/Crystallin J1. | 0.478 |
Ava_2951 | Ava_3887 | Nitrogen regulatory protein P-II (GlnB, GlnK). | ADP-ribosylation/Crystallin J1. | 0.478 |
Ava_3028 | Ava_3887 | Plasma membrane protein of unknown function. | ADP-ribosylation/Crystallin J1. | 0.412 |
Ava_3886 | Ava_3887 | ABC transmembrane type-1 domain-containing protein; L-arginine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-arginine-binding protein / L-histidine-binding protein / L-histidine ABC transporter membrane protein / L-lysine-binding protein / L-lysine ABC transporter membrane protein / L-glutamine-binding protein. | ADP-ribosylation/Crystallin J1. | 0.527 |
Ava_3887 | Ava_0137 | ADP-ribosylation/Crystallin J1. | Nitrogen regulatory protein P-II; Belongs to the P(II) protein family. | 0.478 |
Ava_3887 | Ava_2164 | ADP-ribosylation/Crystallin J1. | Nitrogen regulatory protein P-II. | 0.478 |
Ava_3887 | Ava_2951 | ADP-ribosylation/Crystallin J1. | Nitrogen regulatory protein P-II (GlnB, GlnK). | 0.478 |
Ava_3887 | Ava_3028 | ADP-ribosylation/Crystallin J1. | Plasma membrane protein of unknown function. | 0.412 |
Ava_3887 | Ava_3886 | ADP-ribosylation/Crystallin J1. | ABC transmembrane type-1 domain-containing protein; L-arginine ABC transporter membrane protein / L-glutamine ABC transporter membrane protein / L-arginine-binding protein / L-histidine-binding protein / L-histidine ABC transporter membrane protein / L-lysine-binding protein / L-lysine ABC transporter membrane protein / L-glutamine-binding protein. | 0.527 |