STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ava_3905Ribulose 1,5-bisphosphate carboxylase small subunit. (109 aa)    
Predicted Functional Partners:
cbbL
Ribulose-1,5-bisphosphate carboxylase/oxygenase large subunit; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate in the photorespiration process. Both reactions occur simultaneously and in competition at the same active site.
 
 0.999
Ava_3903
Ribulose 1,5-bisphosphate carboxylase small subunit.
    
 0.977
Ava_0169
Phosphoribulokinase/uridine kinase.
 
  
 0.967
Ava_4469
Ribulose bisphosphate carboxylase, small chain.
    
 
 0.965
Ava_0781
Phosphoribulokinase.
 
  
 0.959
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.920
Ava_1504
HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.903
Ava_2228
HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.903
Ava_4333
HAD-superfamily hydrolase, subfamily IA, variant 1.
    
 0.903
Ava_1031
Glycerate kinase.
     
  0.900
Your Current Organism:
Trichormus variabilis
NCBI taxonomy Id: 240292
Other names: Anabaena flos-aquae A-37, Anabaena flos-aquae UTCC 67, Anabaena sp. CCALA 007, Anabaena sp. PCC 7937, Anabaena variabilis ATCC 29413, Anabaena variabilis IAM M-204, Anabaena variabilis NIES-2095, Anabaena variabilis UTCC 105, Nostoc sp. PCC 7937, T. variabilis ATCC 29413, Trichormus variabilis ATCC 29413
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.