Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_1444 | Ava_4682 | Ava_1444 | Ava_4682 | TPR repeat protein. | WD-40 repeat-containing protein. | 0.431 |
Ava_1444 | alaS | Ava_1444 | Ava_0226 | TPR repeat protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.445 |
Ava_1539 | Ava_4681 | Ava_1539 | Ava_4681 | Dual specificity protein phosphatase. | Serine/threonine protein kinase. | 0.473 |
Ava_1539 | Ava_4682 | Ava_1539 | Ava_4682 | Dual specificity protein phosphatase. | WD-40 repeat-containing protein. | 0.473 |
Ava_1678 | Ava_4682 | Ava_1678 | Ava_4682 | TPR repeat protein. | WD-40 repeat-containing protein. | 0.426 |
Ava_1678 | alaS | Ava_1678 | Ava_0226 | TPR repeat protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.415 |
Ava_2004 | Ava_4682 | Ava_2004 | Ava_4682 | TPR repeat protein. | WD-40 repeat-containing protein. | 0.438 |
Ava_2004 | alaS | Ava_2004 | Ava_0226 | TPR repeat protein. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.415 |
Ava_4645 | Ava_4681 | Ava_4645 | Ava_4681 | Adenylate/guanylate cyclase. | Serine/threonine protein kinase. | 0.592 |
Ava_4645 | Ava_4682 | Ava_4645 | Ava_4682 | Adenylate/guanylate cyclase. | WD-40 repeat-containing protein. | 0.515 |
Ava_4681 | Ava_1539 | Ava_4681 | Ava_1539 | Serine/threonine protein kinase. | Dual specificity protein phosphatase. | 0.473 |
Ava_4681 | Ava_4645 | Ava_4681 | Ava_4645 | Serine/threonine protein kinase. | Adenylate/guanylate cyclase. | 0.592 |
Ava_4681 | Ava_4682 | Ava_4681 | Ava_4682 | Serine/threonine protein kinase. | WD-40 repeat-containing protein. | 0.899 |
Ava_4681 | Ava_4683 | Ava_4681 | Ava_4683 | Serine/threonine protein kinase. | Hypothetical protein. | 0.501 |
Ava_4681 | Ava_4880 | Ava_4681 | Ava_4880 | Serine/threonine protein kinase. | Beta-lactamase-like protein. | 0.486 |
Ava_4681 | alaS | Ava_4681 | Ava_0226 | Serine/threonine protein kinase. | alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain. | 0.464 |
Ava_4681 | uvrB | Ava_4681 | Ava_4680 | Serine/threonine protein kinase. | Excinuclease ABC subunit B; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. Upon binding of the UvrA(2)B(2) complex to a putative damaged site, the DNA wraps around one UvrB monomer. DNA wrap is dependent on ATP binding by UvrB and probably causes local melting of the DNA helix, facilitating insertion of UvrB beta-hairpin between the DNA strands. Then UvrB probes one DNA strand for the presence of a lesion. If a lesion is found the UvrA subunits dissociate [...] | 0.534 |
Ava_4682 | Ava_1444 | Ava_4682 | Ava_1444 | WD-40 repeat-containing protein. | TPR repeat protein. | 0.431 |
Ava_4682 | Ava_1539 | Ava_4682 | Ava_1539 | WD-40 repeat-containing protein. | Dual specificity protein phosphatase. | 0.473 |
Ava_4682 | Ava_1678 | Ava_4682 | Ava_1678 | WD-40 repeat-containing protein. | TPR repeat protein. | 0.426 |
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