Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ava_0390 | Ava_5037 | Ava_0390 | Ava_5037 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | FAD dependent oxidoreductase. | 0.452 |
Ava_0390 | thiO/thiG | Ava_0390 | Ava_3219 | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | Thiazole-phosphate synthase; Catalyzes the FAD-dependent oxidative deamination of glycine. Is essential for thiamine biosynthesis since the oxidation of glycine catalyzed by ThiO generates the glycine imine intermediate (dehydroglycine) required for the biosynthesis of the thiazole ring of thiamine pyrophosphate; In the N-terminal section; belongs to the DAO family. ThiO subfamily. | 0.496 |
Ava_0994 | Ava_1294 | Ava_0994 | Ava_1294 | Rhodanese-like MoeZ/MoeB. | Glutamate synthase (ferredoxin). | 0.494 |
Ava_0994 | Ava_5037 | Ava_0994 | Ava_5037 | Rhodanese-like MoeZ/MoeB. | FAD dependent oxidoreductase. | 0.455 |
Ava_0994 | Ava_5046 | Ava_0994 | Ava_5046 | Rhodanese-like MoeZ/MoeB. | ThiS, thiamine-biosynthesis. | 0.914 |
Ava_0994 | thiO/thiG | Ava_0994 | Ava_3219 | Rhodanese-like MoeZ/MoeB. | Thiazole-phosphate synthase; Catalyzes the FAD-dependent oxidative deamination of glycine. Is essential for thiamine biosynthesis since the oxidation of glycine catalyzed by ThiO generates the glycine imine intermediate (dehydroglycine) required for the biosynthesis of the thiazole ring of thiamine pyrophosphate; In the N-terminal section; belongs to the DAO family. ThiO subfamily. | 0.970 |
Ava_1294 | Ava_0994 | Ava_1294 | Ava_0994 | Glutamate synthase (ferredoxin). | Rhodanese-like MoeZ/MoeB. | 0.494 |
Ava_1294 | Ava_2942 | Ava_1294 | Ava_2942 | Glutamate synthase (ferredoxin). | L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family. | 0.924 |
Ava_1294 | Ava_5037 | Ava_1294 | Ava_5037 | Glutamate synthase (ferredoxin). | FAD dependent oxidoreductase. | 0.433 |
Ava_1294 | gcvT | Ava_1294 | Ava_2760 | Glutamate synthase (ferredoxin). | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.440 |
Ava_1294 | thiO/thiG | Ava_1294 | Ava_3219 | Glutamate synthase (ferredoxin). | Thiazole-phosphate synthase; Catalyzes the FAD-dependent oxidative deamination of glycine. Is essential for thiamine biosynthesis since the oxidation of glycine catalyzed by ThiO generates the glycine imine intermediate (dehydroglycine) required for the biosynthesis of the thiazole ring of thiamine pyrophosphate; In the N-terminal section; belongs to the DAO family. ThiO subfamily. | 0.461 |
Ava_2942 | Ava_1294 | Ava_2942 | Ava_1294 | L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Glutamate synthase (ferredoxin). | 0.924 |
Ava_2942 | Ava_5037 | Ava_2942 | Ava_5037 | L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family. | FAD dependent oxidoreductase. | 0.416 |
Ava_2942 | gcvT | Ava_2942 | Ava_2760 | L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Aminomethyltransferase; The glycine cleavage system catalyzes the degradation of glycine. | 0.886 |
Ava_2942 | thiO/thiG | Ava_2942 | Ava_3219 | L-proline dehydrogenase; Belongs to the aldehyde dehydrogenase family. | Thiazole-phosphate synthase; Catalyzes the FAD-dependent oxidative deamination of glycine. Is essential for thiamine biosynthesis since the oxidation of glycine catalyzed by ThiO generates the glycine imine intermediate (dehydroglycine) required for the biosynthesis of the thiazole ring of thiamine pyrophosphate; In the N-terminal section; belongs to the DAO family. ThiO subfamily. | 0.448 |
Ava_5036 | Ava_5037 | Ava_5036 | Ava_5037 | Conserved hypothetical protein. | FAD dependent oxidoreductase. | 0.534 |
Ava_5036 | Ava_5038 | Ava_5036 | Ava_5038 | Conserved hypothetical protein. | Alpha/beta hydrolase fold protein. | 0.478 |
Ava_5037 | Ava_0390 | Ava_5037 | Ava_0390 | FAD dependent oxidoreductase. | Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family. | 0.452 |
Ava_5037 | Ava_0994 | Ava_5037 | Ava_0994 | FAD dependent oxidoreductase. | Rhodanese-like MoeZ/MoeB. | 0.455 |
Ava_5037 | Ava_1294 | Ava_5037 | Ava_1294 | FAD dependent oxidoreductase. | Glutamate synthase (ferredoxin). | 0.433 |
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