STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxuBPutative oxidoreductase UxuB. (281 aa)    
Predicted Functional Partners:
uxuA
Mannonate dehydratase.
 
  0.974
gltB_1
Ferredoxin-dependent glutamate synthase 1.
     
 0.847
yjmD
Putative zinc-type alcohol dehydrogenase-like protein YjmD.
 
  0.803
ptsG_1
EIICBA-Glc.
     
 0.772
kdgA_1
KHG/KDPG aldolase.
 
     0.733
siaT_1
Neu5Ac permease.
 
  
  0.724
siaT_2
Neu5Ac permease.
 
     0.716
acr1
Fatty acyl-CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  0.701
fabG_1
3-oxoacyl-[acyl-carrier-protein] reductase FabG.
  
  
  0.638
CDQ18499.1
Hypothetical protein.
   
   0.625
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.