STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDQ19461.1Hypothetical protein. (137 aa)    
Predicted Functional Partners:
CDQ19864.1
Hypothetical protein.
  
     0.595
rsiX
Sigma-X negative effector.
 
     0.589
sigX_1
RNA polymerase sigma factor SigX; Belongs to the sigma-70 factor family. ECF subfamily.
       0.529
CDQ21180.1
Germination protein, Ger(x)C family.
  
     0.517
CDQ18752.1
Sulfite exporter TauE/SafE.
  
     0.483
gerAB
Spore germination protein A2.
  
     0.467
CDQ19574.1
Hypothetical protein.
  
     0.457
CDQ21125.1
Putative membrane protein.
 
     0.423
CDQ20517.1
Hypothetical protein.
  
     0.412
bceB
Bacitracin export permease protein BceB.
  
     0.410
Your Current Organism:
Halobacillus dabanensis
NCBI taxonomy Id: 240302
Other names: CGMCC 1.3704, H. dabanensis, Halobacillus dabanensis Liu et al. 2005, Halobacillus sp. D-8, JCM 12772, strain D-8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.