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pepD-1 protein (Porphyromonas gingivalis W83) - STRING interaction network
"pepD-1" - Aminoacyl-histidine dipeptidase in Porphyromonas gingivalis W83
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepD-1Aminoacyl-histidine dipeptidase (484 aa)    
Predicted Functional Partners:
PG_1271
Acetylornithine aminotransferase (409 aa)
       
  0.831
PG_0136
Hypothetical protein (349 aa)
              0.831
PG_1522
Mandelate racemase/muconate lactonizing enzyme family protein; Converts 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1- carboxylate (SHCHC) to 2-succinylbenzoate (OSB) (356 aa)
       
    0.773
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3’-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits (258 aa)
     
 
  0.642
fabD
Malonyl CoA-ACP transacylase (293 aa)
              0.583
PG_2043
Hypothetical protein (364 aa)
              0.538
mgtE
Magnesium transporter; Acts as a magnesium transporter (450 aa)
              0.491
PG_0032
Beta-mannosidase (861 aa)
       
 
  0.477
lacZ-2
Beta-galactosidase (1017 aa)
       
 
  0.469
lacZ-1
Beta-galactosidase (1112 aa)
       
 
  0.469
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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