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PG_0162 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_0162" - ECF subfamily RNA polymerase sigma factor in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_0162ECF subfamily RNA polymerase sigma factor (193 aa)    
Predicted Functional Partners:
PG_1318
ECF subfamily RNA polymerase sigma factor (188 aa)
   
     
  0.816
PG_1827
ECF subfamily RNA polymerase sigma factor (213 aa)
   
     
  0.716
PG_0214
ECF subfamily RNA polymerase sigma factor (166 aa)
   
     
  0.653
PG_0928
Response regulator (518 aa)
   
          0.612
PG_0161
Hypothetical protein (49 aa)
              0.609
PG_0052
Sensor histidine kinase (395 aa)
   
          0.586
PG_0534
Hypothetical protein (827 aa)
   
     
  0.581
pfk
Phosphofructokinase (549 aa)
              0.539
PG_0985
ECF subfamily RNA polymerase sigma factor (168 aa)
   
     
  0.530
PG_0236
Hypothetical protein (506 aa)
   
     
  0.526
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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