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ragB protein (Porphyromonas gingivalis W83) - STRING interaction network
"ragB" - Lipoprotein RagB in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ragBLipoprotein RagB (501 aa)    
Predicted Functional Partners:
ragA
ragA protein (1017 aa)
 
     
  0.982
PG_0020
MarR family transcriptional regulator (234 aa)
   
          0.602
PG_0452
Hypothetical protein (715 aa)
   
          0.576
PG_0172
Exonuclease (260 aa)
   
          0.539
PG_1006
Hypothetical protein (894 aa)
   
          0.535
PG_1010
ABC transporter ATP-binding protein (275 aa)
   
          0.523
PG_2227
Hypothetical protein (218 aa)
   
          0.509
PG_0706
Hypothetical protein (150 aa)
   
          0.498
PG_2022
Hypothetical protein (847 aa)
   
          0.485
PG_0241
Putative lipoprotein (284 aa)
   
     
  0.465
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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