STRINGSTRING
PG_0228 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_0228" - DdaH family protein in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_0228DdaH family protein (308 aa)    
Predicted Functional Partners:
PG_1537
Hypothetical protein (99 aa)
   
          0.765
PG_1270
Hypothetical protein (309 aa)
 
          0.750
radA
DNA repair protein RadA; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3’ invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA’s homology-searching function (461 aa)
              0.712
PG_0229
Hypothetical protein (132 aa)
              0.665
PG_1063
Transcriptional regulator (146 aa)
   
          0.609
PG_1096
Hypothetical protein (360 aa)
   
          0.589
PG_1414
Hypothetical protein (871 aa)
   
          0.566
PG_0226
Transglutaminase (897 aa)
              0.549
PG_0179
Hypothetical protein (324 aa)
   
          0.533
PG_1271
Acetylornithine aminotransferase (409 aa)
 
        0.506
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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