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rimP protein (Porphyromonas gingivalis W83) - STRING interaction network
"rimP" - Hypothetical protein in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimPHypothetical protein; Required for maturation of 30S ribosomal subunits (152 aa)    
Predicted Functional Partners:
nusA
Transcription elongation factor NusA; Participates in both transcription termination and antitermination (444 aa)
              0.802
PG_0649
Hypothetical protein (194 aa)
 
          0.773
PG_0482
Hypothetical protein (143 aa)
   
          0.743
PG_0448
Hypothetical protein (434 aa)
   
          0.731
PG_0140
Hypothetical protein (235 aa)
 
          0.727
PG_0980
Hypothetical protein (745 aa)
   
          0.725
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex (979 aa)
         
  0.723
PG_1100
Hypothetical protein (283 aa)
   
          0.721
PG_1405
Hypothetical protein (951 aa)
   
          0.715
PG_0081
Hypothetical protein (725 aa)
   
          0.699
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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