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serS protein (Porphyromonas gingivalis W83) - STRING interaction network
"serS" - seryl-tRNA synthetase in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serSseryl-tRNA synthetase (423 aa)    
Predicted Functional Partners:
cysS
cysteinyl-tRNA synthetase (490 aa)
 
   
  0.919
thrS
threonyl-tRNA synthetase (653 aa)
 
 
  0.911
pheT
phenylalanyl-tRNA synthetase subunit beta (819 aa)
 
   
  0.880
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (680 aa)
   
   
  0.845
trpS
tryptophanyl-tRNA synthetase (327 aa)
   
 
  0.844
glyS
glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly) (515 aa)
     
   
  0.840
gyrB
DNA gyrase subunit B; A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner (654 aa)
 
   
  0.836
pheS
phenylalanyl-tRNA synthetase subunit alpha (340 aa)
   
   
  0.835
lysS
lysyl-tRNA synthetase (578 aa)
 
 
  0.826
tyrS
tyrosyl-tRNA synthetase; Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction- tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr) (430 aa)
   
   
  0.820
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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