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PG_0365 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_0365" - 3'-5' exonuclease in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_03653’-5’ exonuclease (188 aa)    
Predicted Functional Partners:
PG_0364
Hypothetical protein (401 aa)
              0.887
PG_0366
Hypothetical protein (186 aa)
              0.755
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3’- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3’-trailer from precursor tRNA (304 aa)
       
    0.739
PG_0462
Transporter (467 aa)
   
          0.629
PG_1236
Hypothetical protein (236 aa)
   
          0.612
PG_1352
Hypothetical protein (137 aa)
   
          0.521
PG_0125
Hypothetical protein (182 aa)
   
          0.505
PG_1682
Glycosyl transferase (420 aa)
   
          0.499
PG_1683
Hypothetical protein (428 aa)
   
          0.475
PG_1218
Hypothetical protein (152 aa)
   
          0.475
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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