STRINGSTRING
rpsF protein (Porphyromonas gingivalis W83) - STRING interaction network
"rpsF" - Ribosomal protein S6 in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpsFRibosomal protein S6; Binds together with S18 to 16S ribosomal RNA (117 aa)    
Predicted Functional Partners:
rpsR
Ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (90 aa)
   
  0.999
rpsB
Ribosomal protein S2 (281 aa)
     
  0.996
rpsI
Ribosomal protein S9 (128 aa)
   
  0.996
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy (172 aa)
     
  0.995
rpsJ
Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes (101 aa)
     
  0.995
rpsP
Ribosomal protein S16 (192 aa)
   
  0.995
rplI
Ribosomal protein L9; Binds to the 23S rRNA (179 aa)
 
  0.994
rpsL
Ribosomal protein S12; With S4 and S5 plays an important role in translational accuracy (134 aa)
   
  0.994
rpsK
Ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome (128 aa)
     
  0.993
rpsN
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site (89 aa)
     
  0.990
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
Server load: low (6%) [HD]