STRINGSTRING
PG_0632 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_0632" - Biopolymer transport protein ExbD in Porphyromonas gingivalis W83
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_0632Biopolymer transport protein ExbD (139 aa)    
Predicted Functional Partners:
PG_0631
MotA/TolQ/ExbB proton channel family protein (204 aa)
 
          0.971
PG_0633
Hypothetical protein (275 aa)
 
          0.939
PG_0634
ThiJ/PfpI family protein (181 aa)
              0.830
PG_1651
Hypothetical protein (995 aa)
 
          0.729
PG_0782
MotA/TolQ/ExbB proton channel family protein (270 aa)
 
     
  0.712
PG_0449
Hypothetical protein (460 aa)
   
          0.645
PG_0245
Universal stress protein (370 aa)
   
          0.645
pdxJ
Pyridoxine 5’-phosphate synthase; Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5’-phosphate (PNP) and inorganic phosphate (238 aa)
 
          0.613
PG_0781
Hypothetical protein (156 aa)
   
          0.592
PG_0246
Hypothetical protein (63 aa)
   
          0.534
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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