STRINGSTRING
lacZ-1 protein (Porphyromonas gingivalis W83) - STRING interaction network
"lacZ-1" - Beta-galactosidase in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lacZ-1Beta-galactosidase (1112 aa)    
Predicted Functional Partners:
galK
Galactokinase (384 aa)
 
   
  0.752
PG_0664
Gfo/Idh/MocA family oxidoreductase; Glycosidase (495 aa)
              0.709
ligA
NAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5’-phosphoryl and 3’-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA (669 aa)
         
  0.596
pepT
Peptidase T; Cleaves the N-terminal amino acid of tripeptides (405 aa)
       
 
  0.562
folA
Dihydrofolate reductase; Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis (162 aa)
           
  0.529
PG_1884
alpha-L-fucosidase (674 aa)
 
        0.515
PG_0011
Glycosyl hydrolase (1003 aa)
         
  0.513
polA
DNA polymerase type I (926 aa)
   
   
  0.499
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer (355 aa)
   
   
  0.480
galE
UDP-glucose 4-epimerase (342 aa)
         
  0.475
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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