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abfD protein (Porphyromonas gingivalis W83) - STRING interaction network
"abfD" - 4-hydroxybutyryl-CoA dehydratase in Porphyromonas gingivalis W83
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abfD4-hydroxybutyryl-CoA dehydratase (486 aa)    
Predicted Functional Partners:
abfT-1
4-hydroxybutyrate CoA-transferase (431 aa)
       
  0.968
PG_0691
NifU-like protein (94 aa)
 
          0.944
abfT-2
4-hydroxybutyrate CoA-transferase (431 aa)
       
  0.927
PG_1013
acetyl-CoA hydrolase/transferase (498 aa)
       
    0.875
acdA
acyl-CoA dehydrogenase (379 aa)
   
 
  0.836
PG_0775
acyl-CoA dehydrogenase (573 aa)
   
 
  0.814
etfA-2
Electron transfer flavoprotein subunit alpha (335 aa)
       
  0.805
4hbD
NAD-dependent 4-hydroxybutyrate dehydrogenase (371 aa)
 
     
  0.795
PG_1079
enoyl-CoA hydratase/isomerase (256 aa)
       
  0.785
etfA-1
Electron transfer flavoprotein subunit alpha (339 aa)
       
    0.779
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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