STRINGSTRING
pgaA protein (Porphyromonas gingivalis W83) - STRING interaction network
"pgaA" - Antigen PgaA in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pgaAAntigen PgaA (445 aa)    
Predicted Functional Partners:
PG_0741
Hypothetical protein (199 aa)
 
          0.974
PG_1493
Hypothetical protein (891 aa)
   
          0.690
PG_1492
Hypothetical protein (238 aa)
   
          0.678
PG_1025
Hypothetical protein (362 aa)
   
          0.656
PG_1026
Hypothetical protein (243 aa)
   
          0.636
PG_1469
Type I restriction-modification system, M subunit (1002 aa)
   
          0.487
PG_0079
Abortive infection protein (433 aa)
   
          0.440
PG_1790
Hypothetical protein (494 aa)
   
          0.428
PG_0544
Type I restriction-modification system, M subunit (648 aa)
              0.414
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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