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pdhD protein (Porphyromonas gingivalis W83) - STRING interaction network
"pdhD" - Alpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pdhDAlpha keto acid dehydrogenase complex, E3 component, lipoamide dehydrogenase (449 aa)    
Predicted Functional Partners:
PG_0429
Pyruvate synthase (619 aa)
       
  0.962
PG_1638
Thioredoxin family protein (328 aa)
 
  0.962
gcvP
Glycine dehydrogenase (955 aa)
   
 
  0.959
PG_1812
2-ketoisovalerate ferredoxin reductase (353 aa)
       
    0.959
trx
Thioredoxin (104 aa)
   
  0.951
PG_2175
Hypothetical protein (160 aa)
   
  0.950
PG_2042
Thioredoxin family protein (336 aa)
   
  0.950
PG_1084
Thioredoxin family protein (358 aa)
   
  0.950
PG_0275
Thioredoxin family protein (169 aa)
   
  0.950
maeB
Malic enzyme (759 aa)
   
 
  0.940
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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