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kamA protein (Porphyromonas gingivalis W83) - STRING interaction network
"kamA" - L-lysine 2,3-aminomutase in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamAL-lysine 2,3-aminomutase (416 aa)    
Predicted Functional Partners:
kamD
D-lysine 5,6-aminomutase subunit alpha (523 aa)
       
  0.957
kamE
D-lysine 5,6-aminomutase subunit beta (263 aa)
       
  0.953
PG_1072
MutS family protein (463 aa)
         
  0.804
PG_1069
Zinc-containing alcohol dehydrogenase (347 aa)
         
  0.755
PG_1071
Hypothetical protein (322 aa)
              0.720
PG_1068
Hypothetical protein (273 aa)
              0.697
PG_1067
Hypothetical protein (129 aa)
         
  0.674
PG_1075
Coenzyme A transferase subunit beta (220 aa)
              0.662
ctfA
Butyrate-acetoacetate CoA-transferase subunit A (214 aa)
              0.616
PG_0548
Pyruvate ferredoxin/flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1193 aa)
       
      0.485
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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