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kamE protein (Porphyromonas gingivalis W83) - STRING interaction network
"kamE" - D-lysine 5,6-aminomutase subunit beta in Porphyromonas gingivalis W83
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
kamED-lysine 5,6-aminomutase subunit beta (263 aa)    
Predicted Functional Partners:
kamD
D-lysine 5,6-aminomutase subunit alpha (523 aa)
 
 
  0.998
PG_1069
Zinc-containing alcohol dehydrogenase (347 aa)
 
   
    0.981
PG_1071
Hypothetical protein (322 aa)
 
          0.963
PG_1072
MutS family protein (463 aa)
 
     
  0.960
kamA
L-lysine 2,3-aminomutase (416 aa)
       
  0.953
PG_1067
Hypothetical protein (129 aa)
 
          0.899
PG_1075
Coenzyme A transferase subunit beta (220 aa)
              0.848
PG_1068
Hypothetical protein (273 aa)
 
          0.814
metK
S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme (429 aa)
       
    0.781
nrdG
Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5’-deoxy-adenosine (163 aa)
       
    0.778
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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