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gdh protein (Porphyromonas gingivalis W83) - STRING interaction network
"gdh" - Glutamate dehydrogenase in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gdhGlutamate dehydrogenase; Probably involved in degradation rather than biosynthesis of glutamate (445 aa)    
Predicted Functional Partners:
PG_1271
Acetylornithine aminotransferase (409 aa)
   
 
  0.832
PG_1327
Aminotransferase (436 aa)
   
 
  0.807
panD
Aspartate-1-decarboxylase; Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine (118 aa)
       
    0.786
PG_0548
Pyruvate ferredoxin/flavodoxin oxidoreductase; Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin (1193 aa)
         
  0.747
cdsA
Phosphatidate cytidylyltransferase (284 aa)
 
   
  0.745
PG_0429
Pyruvate synthase (619 aa)
         
  0.734
maeB
Malic enzyme (759 aa)
   
   
  0.609
tkt
Transketolase (675 aa)
   
   
  0.604
gltD
Glutamate synthase small subunit (462 aa)
   
 
  0.585
pgm
Phosphomannomutase (462 aa)
   
   
  0.547
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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