STRINGSTRING
hup-2 protein (Porphyromonas gingivalis W83) - STRING interaction network
"hup-2" - DNA-binding protein HU in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hup-2DNA-binding protein HU (92 aa)    
Predicted Functional Partners:
pheT
phenylalanyl-tRNA synthetase subunit beta (819 aa)
   
 
  0.797
PG_1257
Hypothetical protein (30 aa)
              0.752
PG_1256
Ribonuclease (504 aa)
         
  0.702
polA
DNA polymerase type I (926 aa)
   
 
  0.627
rpsA
Ribosomal protein S1 (599 aa)
 
 
  0.613
ssb
ssDNA-binding protein (156 aa)
   
 
  0.600
metG
methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (680 aa)
   
 
  0.598
nrdG
Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5’-deoxy-adenosine (163 aa)
              0.575
lpxC/fabZ
Bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-ACP dehydratase; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis (462 aa)
     
    0.573
cmk
Cytidylate kinase (231 aa)
 
   
  0.573
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
Server load: low (11%) [HD]