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gmd protein (Porphyromonas gingivalis W83) - STRING interaction network
"gmd" - GDP-mannose 4,6-dehydratase in Porphyromonas gingivalis W83
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gmdGDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose (361 aa)    
Predicted Functional Partners:
fcl
GDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (357 aa)
 
  0.999
manC
Mannose-1-phosphate guanylyltransferase (361 aa)
   
 
  0.909
PG_1504
NAD dependent protein (328 aa)
   
  0.908
PG_1954
NAD dependent epimerase/reductase-like protein (339 aa)
   
  0.906
PG_1235
Epimerase/reductase (318 aa)
   
  0.906
porR
Pigmentation and extracellular proteinase regulator (384 aa)
       
  0.892
pgm
Phosphomannomutase (462 aa)
   
 
  0.834
PG_2010
Phosphomannomutase (550 aa)
   
 
  0.812
trx
Thioredoxin (104 aa)
     
      0.737
galE
UDP-glucose 4-epimerase (342 aa)
   
   
  0.671
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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