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PG_1318 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_1318" - ECF subfamily RNA polymerase sigma factor in Porphyromonas gingivalis W83
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1318ECF subfamily RNA polymerase sigma factor (188 aa)    
Predicted Functional Partners:
PG_0162
ECF subfamily RNA polymerase sigma factor (193 aa)
   
     
  0.816
PG_1316
Hypothetical protein (176 aa)
              0.714
PG_1827
ECF subfamily RNA polymerase sigma factor (213 aa)
   
     
  0.704
PG_1317
Hypothetical protein (136 aa)
              0.697
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1433 aa)
       
 
  0.596
slyD
Peptidyl-prolyl cis-trans isomerase SlyD (190 aa)
              0.578
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (237 aa)
 
          0.496
htrA
htrA protein (498 aa)
   
   
  0.466
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate (518 aa)
         
  0.430
PG_1053
Transcriptional regulator (228 aa)
   
     
  0.423
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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