STRINGSTRING
PG_1403 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_1403" - Rhomboid family protein in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1403Rhomboid family protein (288 aa)    
Predicted Functional Partners:
PG_1404
Rhomboid family protein (238 aa)
 
     
  0.957
PG_1405
Hypothetical protein (951 aa)
 
          0.861
PG_1402
AP endonuclease domain-containing protein (310 aa)
         
  0.843
PG_2214
Hypothetical protein (424 aa)
 
          0.718
PG_1651
Hypothetical protein (995 aa)
   
          0.680
PG_1372
Hypothetical protein (473 aa)
   
          0.670
PG_1401
Tryptophanase (459 aa)
         
  0.652
PG_0484
Hypothetical protein (335 aa)
   
          0.569
PG_0633
Hypothetical protein (275 aa)
   
          0.564
PG_0980
Hypothetical protein (745 aa)
   
          0.558
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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