STRINGSTRING
rfbB protein (Porphyromonas gingivalis W83) - STRING interaction network
"rfbB" - dTDP-glucose 4,6-dehydratase in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rfbBdTDP-glucose 4,6-dehydratase (354 aa)    
Predicted Functional Partners:
rfbC
dTDP-4-dehydrorhamnose 3,5-epimerase (196 aa)
 
 
  0.999
rfbA
Glucose-1-phosphate thymidylyltransferase; Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis (289 aa)
 
  0.999
rfbD
dTDP-4-dehydrorhamnose reductase (285 aa)
   
 
  0.991
porR
Pigmentation and extracellular proteinase regulator (384 aa)
   
 
  0.891
fcl
GDP-fucose synthetase; Catalyzes the two-step NADP-dependent conversion of GDP- 4-dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction (357 aa)
   
 
  0.858
PG_1504
NAD dependent protein (328 aa)
 
 
0.857
PG_1954
NAD dependent epimerase/reductase-like protein (339 aa)
   
 
  0.857
PG_1235
Epimerase/reductase (318 aa)
   
 
  0.857
PG_2010
Phosphomannomutase (550 aa)
       
  0.756
pgm
Phosphomannomutase (462 aa)
       
  0.755
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
Server load: low (8%) [HD]