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rpe protein (Porphyromonas gingivalis W83) - STRING interaction network
"rpe" - Ribulose-phosphate 3-epimerase in Porphyromonas gingivalis W83
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpeRibulose-phosphate 3-epimerase (218 aa)    
Predicted Functional Partners:
tkt
Transketolase (675 aa)
  0.999
PG_1745
Phosphoribulokinase (529 aa)
   
  0.942
PG_1747
Ribose 5-phosphate isomerase B (145 aa)
       
  0.928
udk
Uridine kinase (209 aa)
   
 
  0.884
thrS
threonyl-tRNA synthetase (653 aa)
   
    0.872
PG_1594
ComEC/Rec2-like protein (511 aa)
              0.869
rsgA
Ribosome-associated GTPase; May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (315 aa)
            0.858
folC
Folylpolyglutamate synthase (429 aa)
 
   
  0.818
pgk
Phosphoglycerate kinase (418 aa)
 
 
  0.797
dxs
Deoxyxylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP) (634 aa)
   
 
    0.787
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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