Known metabolic pathways, protein complexes, signal transduction pathways, etc ... from curated databases.
Genes that are sometimes fused into single open reading frames.
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Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
colored nodes: query proteins and first shell of interactors
white nodes: second shell of interactors
empty nodes: proteins of unknown 3D structure
filled nodes: some 3D structure is known or predicted
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
from curated databases
Lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (226 aa)
Predicted Functional Partners:
DnaK suppressor protein (126 aa)
Hypothetical protein (262 aa)
Signal peptidase I (465 aa)
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (1137 aa)
Hypothetical protein (110 aa)
Hypothetical protein (157 aa)
Hypothetical protein (200 aa)
Hypothetical protein (228 aa)
Outer membrane protein (891 aa)
Hypothetical protein (951 aa)
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619 Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83