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lspA protein (Porphyromonas gingivalis W83) - STRING interaction network
"lspA" - Lipoprotein signal peptidase in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lspALipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins (226 aa)    
Predicted Functional Partners:
PG_1597
DnaK suppressor protein (126 aa)
 
          0.928
PG_1599
Hypothetical protein (262 aa)
              0.859
lepB
Signal peptidase I (465 aa)
 
     
  0.799
ileS
isoleucyl-tRNA synthetase; Catalyzes the attachment of isoleucine to tRNA(Ile). As IleRS can inadvertently accommodate and process structurally similar amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as ’pretransfer’ editing and involves the hydrolysis of activated Val-AMP. The other activity is designated ’posttransfer’ editing and involves deacylation of mischarged Val-tRNA(Ile) (1137 aa)
              0.769
PG_1217
Hypothetical protein (110 aa)
   
          0.768
PG_0947
Hypothetical protein (157 aa)
 
          0.766
PG_1367
Hypothetical protein (200 aa)
   
          0.757
PG_1430
Hypothetical protein (228 aa)
   
          0.719
PG_0191
Outer membrane protein (891 aa)
   
          0.698
PG_1405
Hypothetical protein (951 aa)
   
          0.663
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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