STRINGSTRING
dinF protein (Porphyromonas gingivalis W83) - STRING interaction network
"dinF" - DNA-damage-inducible protein F in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dinFDNA-damage-inducible protein F (436 aa)    
Predicted Functional Partners:
PG_1641
Phosphotyrosine protein phosphatase (167 aa)
         
  0.827
PG_1639
Hypothetical protein (47 aa)
              0.815
PG_1355
Acyltransferase (176 aa)
     
    0.589
PG_1249
1-acyl-sn-glycerol-3-phosphate acyltransferase (204 aa)
     
    0.589
PG_1638
Thioredoxin family protein (328 aa)
     
      0.587
PG_0975
PhoH family protein (330 aa)
       
      0.535
ssb
ssDNA-binding protein (156 aa)
       
    0.529
PG_1180
Hypothetical protein (801 aa)
       
    0.524
PG_1091
DHH subfamily 1 protein (331 aa)
   
        0.426
rbfA
Ribosome-binding factor A (111 aa)
   
        0.426
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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