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PG_1660 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_1660" - ECF subfamily RNA polymerase sigma factor in Porphyromonas gingivalis W83
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1660ECF subfamily RNA polymerase sigma factor (174 aa)    
Predicted Functional Partners:
PG_1659
Hypothetical protein (130 aa)
         
  0.876
PG_1827
ECF subfamily RNA polymerase sigma factor (213 aa)
   
     
  0.823
PG_0214
ECF subfamily RNA polymerase sigma factor (166 aa)
   
     
  0.727
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1433 aa)
   
 
 
  0.653
PG_0985
ECF subfamily RNA polymerase sigma factor (168 aa)
   
     
  0.567
PG_1661
Hypothetical protein (95 aa)
         
  0.520
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre- crRNA and tracrRNA of type II CRISPR loci if present in the organism (237 aa)
 
          0.506
PG_1982
CRISPR-associated Cas1 family protein (1031 aa)
   
     
  0.477
htrA
htrA protein (498 aa)
   
   
  0.467
PG_1662
Hypothetical protein (124 aa)
              0.455
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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