STRINGSTRING
xerC protein (Porphyromonas gingivalis W83) - STRING interaction network
"xerC" - Integrase/recombinase XerD in Porphyromonas gingivalis W83
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerCIntegrase/recombinase XerD (308 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase (353 aa)
     
    0.880
aroE
Shikimate 5-dehydrogenase (249 aa)
     
    0.804
soj
SpoOJ regulator protein (258 aa)
 
   
  0.800
ruvC
Holliday junction resolvase; Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5’-terminal phosphate and a 3’-terminal hydroxyl group (189 aa)
 
 
  0.778
aroQ
3-dehydroquinate dehydratase; Catalyzes a trans-dehydration via an enolate intermediate (141 aa)
              0.768
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing (343 aa)
 
 
  0.707
recN
DNA repair protein RecN; May be involved in recombinational repair of damaged DNA (551 aa)
 
 
  0.656
PG_1636
FtsK/SpoIIIE family protein (861 aa)
 
 
 
  0.654
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB (202 aa)
 
 
  0.616
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3’- to 5’- polarity. Unwinds branched duplex DNA (Y-DNA) (698 aa)
     
  0.558
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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