STRINGSTRING
PG_1899 protein (Porphyromonas gingivalis W83) - STRING interaction network
"PG_1899" - TonB-dependent receptor in Porphyromonas gingivalis W83
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
PG_1899TonB-dependent receptor (794 aa)    
Predicted Functional Partners:
PG_1898
Transporter (202 aa)
 
          0.906
PG_1897
Thiamin pyrophosphokinase catalytic subunit (225 aa)
              0.863
PG_1100
Hypothetical protein (283 aa)
   
          0.751
PG_2139
Hypothetical protein (159 aa)
   
          0.723
PG_0466
Hypothetical protein (251 aa)
   
          0.682
PG_0622
Hypothetical protein (430 aa)
   
          0.650
PG_1101
Sodium-solute symporter family protein (486 aa)
   
          0.637
rsgA
Ribosome-associated GTPase; May play a role in 30S ribosomal subunit biogenesis. Unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover (315 aa)
              0.634
PG_1308
Hypothetical protein (281 aa)
   
          0.621
PG_0980
Hypothetical protein (745 aa)
   
          0.620
Your Current Organism:
Porphyromonas gingivalis W83
NCBI taxonomy Id: 242619
Other names: P. gingivalis W83, Porphyromonas gingivalis W83, Porphyromonas gingivalis str. W83, Porphyromonas gingivalis strain W83
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